Nucleic Acid Structure and Function (BIO, OC, BC)*
- Description
- Nucleotides and nucleosides
- Sugar phosphate backbone
- Pyrimidine, purine residues
- Deoxyribonucleic acid (DNA): double helix, Watson-Crick model of DNA structure
- Base-pairing specificity: A with T, G with C
- Function in transmission of genetic information (BIO)
- DNA denaturation, reannealing, hybridization
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- Ch. 4 DNA, RNA, and the Flow of Genetic Information, pp. 113-140
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- Ch. 33 The Structure of Informational Macromolecules pp. 673-690
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- Ch. 3 Nucleotides, Nucleic Acids, and Genetic Information, pp. 42-79
- Ch. 23 Nucleotide Metabolism, pp. 803-830
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- Ch. 2 Chemical Composition of the Body, pp. 52-55
- Ch. 3 Cells, pp. 75-80
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- Ch. 2 The Chemical Basis of Life, pp. 77-79
- Ch. 10 The Nature of the Gene and the Genome, pp. 373-377, 382-387
- Ch. 18 Techniques in Cell and Molecular Biology, pp. 721-722
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DNA Replication (BIO)
- Mechanism of replication: separation of strands, specific coupling of free nucleic acids
- Semi-conservative nature of replication
- Specific enzymes involved in replication
- Origins of replication, multiple origins in eukaryotes
- Replicating the ends of DNA molecules
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- Ch. 29 DNA Replication, Repair, and Recombination, pp. 949-979
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- Ch. 34 DNA Replication, pp. 695-709
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- Ch. 25 DNA Replication, Repair, and Recombination, pp. 879-937
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- Ch. 13 DNA Replication and Repair, pp. 512-531
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Repair of DNA (BIO)
- Repair during replication
- Repair of mutations
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- Ch. 29 DNA Replication, Repair, and Recombination, pp. 968-970
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- Ch. 35 DNA Repair and Replication, pp. 715-726
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- Ch. 25 DNA Replication, Repair, and Recombination, pp. 909-915
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- Ch. 13 DNA Replication and Repair, pp. 531-537
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Genetic Code (BIO)
- Central Dogma: DNA → RNA → protein
- The triplet code
- Codon-anticodon relationship
- Degenerate code, wobble pairing
- Missense, nonsense codons
- Initiation, termination codons
- Messenger RNA (mRNA)
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- Ch. 4 DNA, RNA, and the Flow of Genetic Information, pp. 114-133
- Ch. 31 Protein Synthesis, pp. 1024-1039
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- Ch. 1 Biochemistry and the Unity of Life, pp. 8-9
- Ch. 39 The Genetic Code, pp. 787-795
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- Ch. 27 Protein Synthesis: Section 1. The Genetic Code, pp. 983-987
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- Ch. 11 The Central Dogma: DNA to RNA to Protein, pp. 405-408, 436-450
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Transcription (BIO)
- Transfer RNA (tRNA); ribosomal RNA (rRNA)
- Mechanism of transcription
- mRNA processing in eukaryotes, introns, exons
- Ribozymes, spliceosomes, small nuclear ribonucleoproteins (snRNPs), small nuclear RNA (snRNAs)
- Functional and evolutionary importance of introns
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- Ch. 30 RNA Synthesis and Processing, pp. 983-1017
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- Ch. 36 RNA Synthesis and Regulation in Bacteria, pp. 733-746
- Ch. 37 Gene Expression in Eukaryotes, pp. 751-763
- Ch. 38 RNA Processing in Eukaryotes, pp. 769-780
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- Ch. 26 Transcription and RNA processing, pp. 938-987
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- Ch. 11 The Central Dogma: DNA to RNA to Protein, pp. 408-436, 439-442
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Translation (BIO)
- Roles of mRNA, tRNA, rRNA
- Role and structure of ribosomes
- Initiation, termination co-factors
- Post-translational modification of proteins
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- Ch. 31 Protein Synthesis, pp. 1021-1051
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- Ch. 39 The Genetic Code, pp. 787-799
- Ch. 40 The Mechanism of Protein Synthesis, pp. 803-822
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- Ch. 27 Protein Synthesis: Section 4. Translation, pp. 1004-1023
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- Ch. 11 The Central Dogma: DNA to RNA to Protein, pp. 442-450
- Ch. 12 Control of Gene Expression, pp. 509-511
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Eukaryotic Chromosome Organization (BIO)
- Chromosomal proteins
- Single copy vs. repetitive DNA
- Supercoiling
- Heterochromatin vs. euchromatin
- Telomeres, centromeres
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- Ch. 33 The Structure of Informational Macromolecules, pp. 685-690
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- Ch. 24 Nucleic Acid Structure: Section 5. Eukaryotic Chromosome Structure, pp. 867-877
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- Ch. 1 Introduction to the Study of Cell and Molecular Biology, pp. 7-13
- Ch. 10 The Nature of the Gene and the Genome, pp. 381-382
- Ch. 12 Control of Gene Expression, pp. 465-473
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Control of Gene Expression in Prokaryotes (BIO)
- Operon Concept, Jacob-Monod Model
- Gene repression in bacteria
- Positive control in bacteria
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- Ch. 32 The Control of Gene Expression in Prokaryotes, pp. 1057-1071
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- Ch. 36 RNA Synthesis and Regulation in Bacteria, pp. 733-746
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- Ch. 28 Regulation of Gene Expression: Section 2. Regulation of Prokaryotic Gene Expression, pp. 1043-1051
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- Ch. 12 Control of Gene Expression, pp. 455-460, 499-511
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Control of Gene Expression in Eukaryotes (BIO)
- Transcriptional regulation
- DNA binding proteins, transcription factors
- Gene amplification and duplication
- Post-transcriptional control, basic concept of splicing (introns, exons)
- Cancer as a failure of normal cellular controls, oncogenes, tumor-suppressor genes
- Regulation of chromatin structure
- DNA methylation
- Role of noncoding RNAs
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- Ch. 33 The Control of Gene Expression in Eukaryotes, pp. 1075-1094
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- Ch. 37 Gene Expression in Eukaryotes, pp. 751-763
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- Ch. 28 Regulation of Gene Expression: Section 3. Regulation of Eukaryotic Gene Expression, pp. 1052-1079
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- Ch. 12 Control of Gene Expression, pp. 483-511
- Ch. 16 Cancer, pp. 638-649
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Recombinant DNA and Biotechnology (BIO)
- Gene cloning
- Restriction enzymes
- DNA libraries
- Generation of cDNA
- Hybridization
- Expressing cloned genes
- Polymerase chain reaction
- Gel electrophoresis and Southern blotting
- DNA sequencing
- Analyzing gene expression
- Determining gene function
- Stem cells
- Practical applications of DNA technology: medical applications, human gene therapy, pharmaceuticals, forensic evidence, environmental cleanup, agriculture
- Safety and ethics of DNA technology
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- Ch. 5 Exploring Genes and Genomes, pp. 145-180
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- Ch. 41 Recombinant DNA Techniques, pp. 827-847
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- Ch. 25 DNA Replication, Repair, and Recombination: Section 6. Recombination, pp. 916-937
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- Ch. 2 Chemical Composition of the Body, p. 52
- Ch. 3 Cells, p. 78
- Ch. 17 The Immune System, p. 624
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- Ch. 1 Introduction to the Study of Cell and Molecular Biology, pp. 17-21
- Ch. 12 Control of Gene Expression, pp. 483-484
- Ch. 18 Techniques in Cell and Molecular Biology, pp. 692-740
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