Content Category 1B: Transmission of genetic information from the gene to the protein

Biomolecules and biomolecular assemblies interact in specific, highly-regulated ways to transfer sequence information between biopolymers in living organisms. By storing and transferring biological information, DNA and RNA enable living organisms to reproduce their complex components from one generation to the next. The nucleotide monomers of these biopolymers, being joined by phosphodiester linkages, form a polynucleotide molecule with a “backbone” composed of repeating sugar-phosphate units and “appendages” of nitrogenous bases. The unique sequence of bases in each gene provides specific information to the cell. 

DNA molecules are composed of two polynucleotides that spiral around an imaginary axis, forming a double helix. The two polynucleotides are held together by hydrogen bonds between the paired bases and van der Waals interactions between the stacked bases. The pairing between the bases of two polynucleotides is very specific, and its complementarity allows for a precise replication of the DNA molecule.  

The DNA inherited by an organism leads to specific traits by dictating the synthesis of the biomolecules (RNA molecules and proteins) involved in protein synthesis. While every cell in a multicellular organism inherits the same DNA, its expression is precisely regulated such that different genes are expressed by cells at different stages of development, by cells in different tissues, and by cells exposed to different stimuli.  

The topics included in this Content Category concern not only the molecular mechanisms of the transmission of genetic information from the gene to the protein (transcription and translation), but also the biosynthesis of the important molecules and molecular assemblies that are involved in these mechanisms. The control of gene expression in prokaryotes and eukaryotes is also included. 

Broadly speaking, the field of biotechnology uses biological systems, living organisms, or derivatives thereof, to make or modify products or processes for specific use. The biotechnological techniques emphasized in this Content Category; however, are those that take advantage of the complementary structure of the double-stranded DNA molecule to synthesize, sequence, and amplify them, and to analyze and identify unknown polynucleotide sequences. Included within this treatment of biotechnology are those practical applications which directly impact humans, such as medical applications, human gene therapy, and pharmaceuticals. 

Content in this category covers the biopolymers including ribonucleic acid (RNA), deoxyribonucleic acid (DNA), proteins, and the biochemical processes involved in carrying out the transfer of biological information from DNA. 

Topic Biochemistry
Biochemistry: A Short Course
Biology, 2e
Fundamentals of Biochemistry
Human Physiology
Karp’s Cell and Molecular Biology
Organic Chemistry With a Biological Emphasis, Vol. 1
Organic Chemistry With a Biological Emphasis, Vol. 2
Nucleic Acid Structure and Function (BIO, OC, BC)*
  • Description
  • Nucleotides and nucleosides
    • Sugar phosphate backbone
    • Pyrimidine, purine residues
  • Deoxyribonucleic acid (DNA): double helix, Watson-Crick model of DNA structure
  • Base-pairing specificity: A with T, G with C
  • Function in transmission of genetic information (BIO)
  • DNA denaturation, reannealing, hybridization
  • Ch. 4 DNA, RNA, and the Flow of Genetic Information, pp. 113-140
  • Ch. 33 The Structure of Informational Macromolecules pp. 673-690
  • Ch. 3 Nucleotides, Nucleic Acids, and Genetic Information, pp. 42-79
  • Ch. 23 Nucleotide Metabolism, pp. 803-830
  • Ch. 2 Chemical Composition of the Body, pp. 52-55
  • Ch. 3 Cells, pp. 75-80
  • Ch. 2 The Chemical Basis of Life, pp. 77-79
  • Ch. 10 The Nature of the Gene and the Genome, pp. 373-377, 382-387
  • Ch. 18 Techniques in Cell and Molecular Biology, pp. 721-722
  • Ch. 1.3E, pp. 43-45
  • Ch. 9.1-9.7, pp. 1-38
DNA Replication (BIO)
  • Mechanism of replication: separation of strands, specific coupling of free nucleic acids
  • Semi-conservative nature of replication
  • Specific enzymes involved in replication
  • Origins of replication, multiple origins in eukaryotes
  • Replicating the ends of DNA molecules
  • Ch. 29 DNA Replication, Repair, and Recombination, pp. 949-979
  • Ch. 34 DNA Replication, pp. 695-709
  • Ch. 25 DNA Replication, Repair, and Recombination, pp. 879-937
  • Ch. 3 Cells, pp. 75-80
  • Ch. 13 DNA Replication and Repair, pp. 512-531
NA NA
Repair of DNA (BIO)
  • Repair during replication
  • Repair of mutations
  • Ch. 29 DNA Replication, Repair, and Recombination, pp. 968-970
  • Ch. 35 DNA Repair and Replication, pp. 715-726
  • Ch. 25 DNA Replication, Repair, and Recombination, pp. 909-915
  • Ch. 3 Cells, pp. 79-81
  • Ch. 13 DNA Replication and Repair, pp. 531-537
NA NA
Genetic Code (BIO)
  • Central Dogma: DNA → RNA → protein
  • The triplet code
  • Codon-anticodon relationship
  • Degenerate code, wobble pairing
  • Missense, nonsense codons
  • Initiation, termination codons
  • Messenger RNA (mRNA)
  • Ch. 4 DNA, RNA, and the Flow of Genetic Information, pp. 114-133
  • Ch. 31 Protein Synthesis, pp. 1024-1039
  • Ch. 1 Biochemistry and the Unity of Life, pp. 8-9
  • Ch. 39 The Genetic Code, pp. 787-795
  • Ch. 27 Protein Synthesis: Section 1. The Genetic Code, pp. 983-987
  • Ch. 3 Cells, pp. 75-78
  • Ch. 11 The Central Dogma: DNA to RNA to Protein, pp. 405-408, 436-450
NA NA
Transcription (BIO)
  • Transfer RNA (tRNA); ribosomal RNA (rRNA)
  • Mechanism of transcription
  • mRNA processing in eukaryotes, introns, exons
  • Ribozymes, spliceosomes, small nuclear ribonucleoproteins (snRNPs), small nuclear RNA (snRNAs)
  • Functional and evolutionary importance of introns
  • Ch. 30 RNA Synthesis and Processing, pp. 983-1017
  • Ch. 36 RNA Synthesis and Regulation in Bacteria, pp. 733-746
  • Ch. 37 Gene Expression in Eukaryotes, pp. 751-763
  • Ch. 38 RNA Processing in Eukaryotes, pp. 769-780
  • Ch. 26 Transcription and RNA processing, pp. 938-987
  • Ch. 3 Cells, pp. 75-76
  • Ch. 11 The Central Dogma: DNA to RNA to Protein, pp. 408-436, 439-442
NA NA
Translation (BIO)
  • Roles of mRNA, tRNA, rRNA
  • Role and structure of ribosomes
  • Initiation, termination co-factors
  • Post-translational modification of proteins
  • Ch. 31 Protein Synthesis, pp. 1021-1051
  • Ch. 39 The Genetic Code, pp. 787-799
  • Ch. 40 The Mechanism of Protein Synthesis, pp. 803-822
  • Ch. 27 Protein Synthesis: Section 4. Translation, pp. 1004-1023
  • Ch. 3 Cells, pp. 76-78
  • Ch. 11 The Central Dogma: DNA to RNA to Protein, pp. 442-450
  • Ch. 12 Control of Gene Expression, pp. 509-511
NA NA
Eukaryotic Chromosome Organization (BIO)
  • Chromosomal proteins
  • Single copy vs. repetitive DNA
  • Supercoiling
  • Heterochromatin vs. euchromatin
  • Telomeres, centromeres
NA
  • Ch. 33 The Structure of Informational Macromolecules, pp. 685-690
  • Ch. 24 Nucleic Acid Structure: Section 5. Eukaryotic Chromosome Structure, pp. 867-877
  • Ch. 3 Cells, pp. 73-75
  • Ch. 1 Introduction to the Study of Cell and Molecular Biology, pp. 7-13
  • Ch. 10 The Nature of the Gene and the Genome, pp. 381-382
  • Ch. 12 Control of Gene Expression, pp. 465-473
NA NA
Control of Gene Expression in Prokaryotes (BIO)
  • Operon Concept, Jacob-Monod Model
  • Gene repression in bacteria
  • Positive control in bacteria
  • Ch. 32 The Control of Gene Expression in Prokaryotes, pp. 1057-1071
  • Ch. 36 RNA Synthesis and Regulation in Bacteria, pp. 733-746
  • Ch. 28 Regulation of Gene Expression: Section 2. Regulation of Prokaryotic Gene Expression, pp. 1043-1051
  • Ch. 3 Cells, pp. 75-78
  • Ch. 12 Control of Gene Expression, pp. 455-460, 499-511
NA NA
Control of Gene Expression in Eukaryotes (BIO)
  • Transcriptional regulation
  • DNA binding proteins, transcription factors
  • Gene amplification and duplication
  • Post-transcriptional control, basic concept of splicing (introns, exons)
  • Cancer as a failure of normal cellular controls, oncogenes, tumor-suppressor genes
  • Regulation of chromatin structure
  • DNA methylation
  • Role of noncoding RNAs
  • Ch. 33 The Control of Gene Expression in Eukaryotes, pp. 1075-1094
  • Ch. 37 Gene Expression in Eukaryotes, pp. 751-763
  • Ch. 28 Regulation of Gene Expression: Section 3. Regulation of Eukaryotic Gene Expression, pp. 1052-1079
  • Ch. 3 Cells, pp. 75-78
  • Ch. 12 Control of Gene Expression, pp. 483-511
  • Ch. 16 Cancer, pp. 638-649
NA NA
Recombinant DNA and Biotechnology (BIO)
  • Gene cloning
  • Restriction enzymes
  • DNA libraries
  • Generation of cDNA
  • Hybridization
  • Expressing cloned genes
  • Polymerase chain reaction
  • Gel electrophoresis and Southern blotting
  • DNA sequencing
  • Analyzing gene expression
  • Determining gene function
  • Stem cells
  • Practical applications of DNA technology: medical applications, human gene therapy, pharmaceuticals, forensic evidence, environmental cleanup, agriculture
  • Safety and ethics of DNA technology
  • Ch. 5 Exploring Genes and Genomes, pp. 145-180
  • Ch. 41 Recombinant DNA Techniques, pp. 827-847
  • Ch. 25 DNA Replication, Repair, and Recombination: Section 6. Recombination, pp. 916-937
  • Ch. 2 Chemical Composition of the Body, p. 52
  • Ch. 3 Cells, p. 78
  • Ch. 17 The Immune System, p. 624
  • Ch. 1 Introduction to the Study of Cell and Molecular Biology, pp. 17-21
  • Ch. 12 Control of Gene Expression, pp. 483-484
  • Ch. 18 Techniques in Cell and Molecular Biology, pp. 692-740
NA NA